Demos - TinkerCell

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Demos

Contents

1 Basics (with sound)
2 Ring Oscillator (with sound)
3 Hierarchical modeling (with sound)
4 Genetic Networks
5 B.subtilis bistable system (no sound)
6 Oscillator
7 Feed-forward networks
8 TinkerCell for drawing parts

Basics (with sound)

Basic usage

Ring Oscillator (with sound)

Repressilator

Hierarchical modeling (with sound)

Basic Modules

Genetic Networks

Simple Genetic + Enzymatic network

NOR gate

OR Gate on a Plasmid

B.subtilis bistable system (no sound)

Building bistable system from B.subtilis

Oscillator

Dual Feedback Oscillator

Building and simulating network using Promoters, RBS, etc.

Presentation at CSHL (April 2011)

Feed-forward networks

Control Coefficients of Incoherent Feed Forward

Incoherent Feed Forward using parts

TinkerCell for drawing parts

TinkerCell for just drawing parts

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