To do list
| Raised by | Owner | Priority | Issue | Resolution |
|---|---|---|---|---|
| Herbert | P1 | Any edit boxes that are smaller that the width of an atom should be made wider. | done | |
| Herbert | P1 | OK and Cancel buttons should stay together | done | |
| Herbert | P1 | No error handling on entering incorrect equations | done | |
| Herbert | P1 | Spaces in group box titles | done | |
| Herbert | P1 | Fixed option doesn't work | done | |
| Herbert | P1 | Model Summary Tool update problem | done | |
| Herbert | P1 | Ok/Cancel buttons for Model Summary form? | interface changed | |
| Herbert | P1 | Transcription factor line points to the center of a Gene rather than the front promoter area | done | |
| Herbert | P1 | Group boxes are at different heights? | interface changed | |
| Deepak | P1 | encapsulated mode for modules with movable linkers | ||
| Deepak | P1 | Remember the previous format of the parts/connections trees | done | |
| Deepak | P1 | Interface (like the arrow heads) for changing graphics. use same interface for tree graphics changes | done | |
| Deepak | P1 | progress meter for simulations | done | |
| Deepak | P1 | Different trees with different images, not different tree structure | cancel | |
| Herbert | P1 | Run button with all the C/Python functions | done | |
| Deepak | P1 | Feedback to user for cases such as automatic changes when items are deleted, automatic gene/promoter clicks, etc. | done | |
| Deepak | P1 | More organized way to "replace graphics" | done | |
| Herbert | P1 | Automatically parse equations to extract new parameters and add prefix if needed (eg. convert km to J0.km) | done | |
| Deepak | P1 | Settings menu: edit default plugins, user dir, C libs menu, python path | ...partial.. | |
| Deepak | P1 | Widget for adding and removing arrowheads. Can automatically do it for reversible reactions. | re-thinking | |
| Deepak | P1 | PySceS integration | done | |
| Herbert | P1 | Linear programming integration | done | |
| Deepak | P1 | temporary labels through C/Python | done | |
| Deepak | P1 | log plots | done | |
| Herbert | P1 | View complete sequence for connected items | done | |
| Deepak | P1 | Automatic reversible reactions with indicator | done | |
| Deepak | P1 | Save things such as: flux constraints, last code, user functions (in plot) | ||
| Deepak | P1 | Integrate C function for positive/negative loops | ||
| Deepak | P1 | Tree-like organization + Search feature for functions list | ||
| Deepak | P1 | C/Python interface for changing the parts tree. Python will be suitable for PoBoL | ||
| Deepak | P1 | Antimony to and from Tinkercell dynamic conversion | done...buggy | |
| Deepak | P1 | Module links: straight lines and names |
Showing 32 items