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Deepak Chandran and Herbert M. Sauro. "Hierarchical Modeling for Synthetic Biology", ACS Synthetic Biology 2012, 1(8), pg. 353-364      DOI: 10.1021/sb300033q   URL

Deepak Chandran, Frank T Bergmann and Herbert M Sauro. "TinkerCell: modular CAD tool for synthetic biology". Journal of Biological Engineering 2009, 3:19     DOI: 10.1186/1754-1611-3-19

Deepak Chandran, Frank T. Bergmann and Herbert M. Sauro. "Computer-aided design of biological circuits using TinkerCell". Bioengineering Bugs 2010, 1:4  Pages 276 - 283    DOI: 10.4161/bbug.1.4.12506